Search results for the GEO ID: GSE9349  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM237996 | GPL201 |
|
A104_mond_0
|
mouth, 0
|
Location: mouth
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM237996
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM237nnn/GSM237996/suppl/GSM237996.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM237997 | GPL201 |
|
A105_mond_0
|
mouth, 0
|
Location: mouth
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM237997
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM237nnn/GSM237997/suppl/GSM237997.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM237998 | GPL201 |
|
A107_mond_0
|
mouth, 0
|
Location: mouth
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM237998
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM237nnn/GSM237998/suppl/GSM237998.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM237999 | GPL201 |
|
B101_orofarynx_0
|
orofarynx, 0
|
Location: orofarynx
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM237999
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM237nnn/GSM237999/suppl/GSM237999.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238000 | GPL201 |
|
B102_orofarynx_0
|
orofarynx, 0
|
Location: orofarynx
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238000
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238000/suppl/GSM238000.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238001 | GPL201 |
|
B105_orofarynx_0
|
orofarynx, 0
|
Location: orofarynx
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238001
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238001/suppl/GSM238001.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238002 | GPL201 |
|
B106_orofarynx_0
|
orofarynx, 0
|
Location: orofarynx
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238002
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238002/suppl/GSM238002.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238003 | GPL201 |
|
C101_larynx_0
|
larynx, 0
|
Location: larynx
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238003
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238003/suppl/GSM238003.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238004 | GPL201 |
|
C103_larynx_0
|
larynx, 0
|
Location: larynx
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238004
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238004/suppl/GSM238004.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238005 | GPL201 |
|
C104_larynx_0
|
larynx, 0
|
Location: larynx
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238005
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238005/suppl/GSM238005.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238006 | GPL201 |
|
C105_larynx_0
|
larynx, 0
|
Location: larynx
Metastasis: 0
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238006
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238006/suppl/GSM238006.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238007 | GPL201 |
|
A201_mond_1
|
mouth, 1
|
Location: mouth
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238007
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238007/suppl/GSM238007.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238008 | GPL201 |
|
A202_mond_1
|
mouth, 1
|
Location: mouth
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238008
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238008/suppl/GSM238008.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238009 | GPL201 |
|
A204_mond_1
|
mouth, 1
|
Location: mouth
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238009
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238009/suppl/GSM238009.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238010 | GPL201 |
|
A206_mond_1
|
mouth, 1
|
Location: mouth
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238010
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238010/suppl/GSM238010.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238011 | GPL201 |
|
B202_orofarynx_1
|
orofarynx, 1
|
Location: orofarynx
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238011
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238011/suppl/GSM238011.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238012 | GPL201 |
|
B203_orofarynx_1
|
orofarynx, 1
|
Location: orofarynx
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238012
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238012/suppl/GSM238012.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238013 | GPL201 |
|
B205_orofarynx_1
|
orofarynx, 1
|
Location: orofarynx
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238013
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238013/suppl/GSM238013.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238014 | GPL201 |
|
C203_larynx_1
|
larynx, 1
|
Location: larynx
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238014
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238014/suppl/GSM238014.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238015 | GPL201 |
|
C204_larynx_1
|
larynx, 1
|
Location: larynx
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238015
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238015/suppl/GSM238015.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238016 | GPL201 |
|
C205_larynx_1
|
larynx, 1
|
Location: larynx
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238016
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238016/suppl/GSM238016.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
GSM238017 | GPL201 |
|
C206_larynx_1
|
larynx, 1
|
Location: larynx
Metastasis: 1
|
Gene expression data from squamous cell tumor
|
| Sample_geo_accession | GSM238017
| | Sample_status | Public on May 28 2008
| | Sample_submission_date | Oct 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM238nnn/GSM238017/suppl/GSM238017.CEL.gz
| | Sample_series_id | GSE9349
| | Sample_data_row_count | 8793
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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