Search results for the GEO ID: GSE9429  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM239375 | GPL96 |
|
Diffuse large B-cell lymphoma (2576-S)
|
Lymph Node
|
Lymph node cells from Diffuse large B-cell lymphoma
|
None
|
| Sample_geo_accession | GSM239375
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix),
| | Sample_hyb_protocol | after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239375/suppl/GSM239375.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239376 | GPL96 |
|
Diffuse large B-cell lymphoma (2579-S)
|
Lymph Node
|
Lymph node cells from Diffuse large B-cell Lymphoma
|
None
|
| Sample_geo_accession | GSM239376
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix),
| | Sample_hyb_protocol | after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239376/suppl/GSM239376.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239377 | GPL96 |
|
Diffuse large B-cell lymphoma (2697-S)
|
Lymph node
|
Lymph node cells from Diffuse large B-cell Lymphoma
|
None
|
| Sample_geo_accession | GSM239377
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix),
| | Sample_hyb_protocol | after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239377/suppl/GSM239377.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239378 | GPL96 |
|
Diffuse large B-cell lymphoma (2748-S)
|
Lymph node
|
Lymph node cells from Diffuse large B-cell lymphoma
|
None
|
| Sample_geo_accession | GSM239378
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix),
| | Sample_hyb_protocol | after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239378/suppl/GSM239378.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239458 | GPL96 |
|
Diffuse large B-cell lymphoma (2806-S)
|
Lymph node
|
Lymph node cells from Diffuse large B-cell lymphoma
|
None
|
| Sample_geo_accession | GSM239458
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix), after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239458/suppl/GSM239458.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239459 | GPL96 |
|
Diffuse large B-cell lymphoma (3072-S)
|
Lymph Node
|
Lymph node cells from Diffuse large B-cell lymphoma
|
None
|
| Sample_geo_accession | GSM239459
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix), after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239459/suppl/GSM239459.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239461 | GPL96 |
|
Diffuse large B-cell lymphoma (3180-S)
|
Lymph Node
|
Lymph node cells from Diffuse large B-cell lymphoma
|
None
|
| Sample_geo_accession | GSM239461
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix), after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239461/suppl/GSM239461.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239462 | GPL96 |
|
Diffuse large B-cell lymphoma (3403-S)
|
Lymph Node
|
Lymph node cells from Diffuse large B-cell lymphoma
|
None
|
| Sample_geo_accession | GSM239462
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix), after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239462/suppl/GSM239462.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239463 | GPL96 |
|
Diffuse large B-cell lymphoma (3437-S)
|
Lymph Node
|
Lymph node cells from Diffuse large B-cell lymphoma
|
None
|
| Sample_geo_accession | GSM239463
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix), after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239463/suppl/GSM239463.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
GSM239464 | GPL96 |
|
Folicular Lymphoma Grade III (3463-S)
|
Lymph Node
|
Lymph node cells from Folicular Lymphoma Grade III
|
None
|
| Sample_geo_accession | GSM239464
| | Sample_status | Public on Mar 01 2008
| | Sample_submission_date | Oct 24 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from purified cell populations using the RNeasy Mini Kit (Qiagen, Valencia, CA,USA) according to the manufacturer’s instructions. The RNAintegrity was assessed using Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA).
| | Sample_label_ch1 | BIOTIN
| | Sample_label_protocol_ch1 | Labeling were performed according to protocols from Affymetrix. Briefly,100 ng of total RNA was amplified and labeled using the GeneChip two-cycle cDNA synthesis kit and GeneChip IVT labeling kit (Affymetrix Inc., Santa Clara, CA, USA)
| | Sample_hyb_protocol | Hybridizations were performed according to protocols from Affymetrix.
| | Sample_hyb_protocol | Labeled RNA was hybridized to Human Genome U133A microarray (Affymetrix), after quality checking on GeneChips Test 3 Arrays.
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and
| | Sample_scan_protocol | GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | Expression value for each probe set was calculated using RMAExpress program that uses RMA (robust multi-array average) algorithm
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ana,Isabel,Saez
| | Sample_contact_email | anai.saez.exts@juntadeandalucia.es
| | Sample_contact_phone | 34958023556
| | Sample_contact_institute | Red de Bancos de Tumores de Andalucía
| | Sample_contact_address | Avda. Dr Oloriz, 16
| | Sample_contact_city | Granada
| | Sample_contact_state | Granada
| | Sample_contact_zip/postal_code | 18012
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239464/suppl/GSM239464.CEL.gz
| | Sample_series_id | GSE9429
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
