Search results for the GEO ID: GSE9438  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM239770 | GPL570 |
|
478A
|
brain meningioma
|
ER: 1
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239770
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239770/suppl/GSM239770.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239770/suppl/GSM239770.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239771 | GPL570 |
|
478B
|
brain meningioma
|
ER: 1
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239771
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239771/suppl/GSM239771.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239771/suppl/GSM239771.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239772 | GPL570 |
|
478C
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239772
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239772/suppl/GSM239772.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239772/suppl/GSM239772.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239773 | GPL570 |
|
478D
|
brain meningioma
|
ER: 0
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239773
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239773/suppl/GSM239773.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239773/suppl/GSM239773.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239774 | GPL570 |
|
478E
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239774
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239774/suppl/GSM239774.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239774/suppl/GSM239774.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239775 | GPL570 |
|
478F
|
brain meningioma
|
ER: 0
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239775
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239775/suppl/GSM239775.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239775/suppl/GSM239775.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239776 | GPL570 |
|
478G
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239776
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239776/suppl/GSM239776.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239776/suppl/GSM239776.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239777 | GPL570 |
|
478H
|
brain meningioma
|
ER: 1
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239777
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239777/suppl/GSM239777.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239777/suppl/GSM239777.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239778 | GPL570 |
|
525A
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239778
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239778/suppl/GSM239778.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239778/suppl/GSM239778.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239779 | GPL570 |
|
525B
|
brain meningioma
|
ER: 0
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239779
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239779/suppl/GSM239779.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239779/suppl/GSM239779.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239780 | GPL570 |
|
525C
|
brain meningioma
|
ER: 0
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239780
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239780/suppl/GSM239780.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239780/suppl/GSM239780.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239781 | GPL570 |
|
525D
|
brain meningioma
|
ER: 0
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239781
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239781/suppl/GSM239781.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239781/suppl/GSM239781.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239782 | GPL570 |
|
615A
|
brain meningioma
|
ER: 1
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239782
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239782/suppl/GSM239782.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239782/suppl/GSM239782.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239783 | GPL570 |
|
615B
|
brain meningioma
|
ER: 1
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239783
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239783/suppl/GSM239783.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239783/suppl/GSM239783.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239784 | GPL570 |
|
615D
|
brain meningioma
|
ER: 0
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239784
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239784/suppl/GSM239784.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239784/suppl/GSM239784.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239785 | GPL570 |
|
615E
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239785
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239785/suppl/GSM239785.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239785/suppl/GSM239785.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239786 | GPL570 |
|
615G
|
brain meningioma
|
ER: 1
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239786
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239786/suppl/GSM239786.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239786/suppl/GSM239786.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239787 | GPL570 |
|
615H
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239787
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239787/suppl/GSM239787.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239787/suppl/GSM239787.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239788 | GPL570 |
|
615I
|
brain meningioma
|
ER: 1
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239788
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239788/suppl/GSM239788.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239788/suppl/GSM239788.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239789 | GPL570 |
|
615J
|
brain meningioma
|
ER: 1
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239789
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239789/suppl/GSM239789.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239789/suppl/GSM239789.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239790 | GPL570 |
|
711A
|
brain meningioma
|
ER: 1
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239790
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239790/suppl/GSM239790.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239790/suppl/GSM239790.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239791 | GPL570 |
|
711B
|
brain meningioma
|
ER: 0
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239791
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239791/suppl/GSM239791.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239791/suppl/GSM239791.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239792 | GPL570 |
|
711C
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239792
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239792/suppl/GSM239792.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239792/suppl/GSM239792.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239793 | GPL570 |
|
711D
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239793
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239793/suppl/GSM239793.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239793/suppl/GSM239793.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239794 | GPL570 |
|
711E
|
brain meningioma
|
ER: 0
PR: 0
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239794
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239794/suppl/GSM239794.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239794/suppl/GSM239794.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239795 | GPL570 |
|
711G
|
brain meningioma
|
ER: 0
PR: 1
|
Gene expression of brain tissue from meningioma patient. Progesterone (PR) and estrogen (ER) hormone receptors were measured via immunohistochemistry and compared with gene expression profiling results.
|
| Sample_geo_accession | GSM239795
| | Sample_status | Public on Dec 01 2007
| | Sample_submission_date | Oct 26 2007
| | Sample_last_update_date | Jul 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumor tissue was snap-frozen at the time of surgery and stored at –80 degrees Celsius in the Brain Tumor Tissue Bank at Brigham and Women’s Hospital. Extraction of RNA from these fresh frozen tumor specimens was performed.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated
| | Sample_hyb_protocol | The mRNA was reverse transcribed to generate cDNA, which was then biotinylated and hybridized to Affymetrix U133 plus 2.0 expression arrays
| | Sample_scan_protocol | Affymetrix
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Peter,J,Park
| | Sample_contact_email | peter_park@harvard.edu
| | Sample_contact_phone | 617-432-7373
| | Sample_contact_department | Center for Biomedical Informatics
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 10 Shattuck St
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239795/suppl/GSM239795.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM239nnn/GSM239795/suppl/GSM239795.EXP.gz
| | Sample_series_id | GSE9438
| | Sample_data_row_count | 54675
| | |
|
GSM239796 | |
|
|
|
|
|
|
|
GSM239797 | |
|
|
|
|
|
|
|
GSM239798 | |
|
|
|
|
|
|
|
GSM239799 | |
|
|
|
|
|
|
|
GSM239800 | |
|
|
|
|
|
|
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
