Search results for the GEO ID: GSE9480  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM240630 | GPL1355 |
|
Untreated Testes, biological rep 1
|
normal rat testis
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normal adult rat testis
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gene expression data from normal rat testis
|
| Sample_geo_accession | GSM240630
| | Sample_status | Public on Nov 07 2007
| | Sample_submission_date | Oct 31 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 mg/kg b.w. cadmium chloride injected via i.p.
| | Sample_growth_protocol_ch1 | Adult male SD rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by Qiagen's Rneasy kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | C YAN,,CHENG
| | Sample_contact_email | yan@popcbr.rockefeller.edu
| | Sample_contact_phone | 212-327-8738
| | Sample_contact_fax | 212-327-8733
| | Sample_contact_institute | POPULATION COUNCIL
| | Sample_contact_address | 1230 YORK AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240630/suppl/GSM240630.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240630/suppl/GSM240630.EXP.gz
| | Sample_series_id | GSE9480
| | Sample_data_row_count | 31099
| | |
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GSM240631 | GPL1355 |
|
Untreated Testes, biological rep 2
|
normal rat testis
|
normal adult rat testis
|
gene expression data from normal rat testis
|
| Sample_geo_accession | GSM240631
| | Sample_status | Public on Nov 07 2007
| | Sample_submission_date | Oct 31 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 mg/kg b.w. cadmium chloride injected via i.p.
| | Sample_growth_protocol_ch1 | Adult male SD rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by Qiagen's Rneasy kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | C YAN,,CHENG
| | Sample_contact_email | yan@popcbr.rockefeller.edu
| | Sample_contact_phone | 212-327-8738
| | Sample_contact_fax | 212-327-8733
| | Sample_contact_institute | POPULATION COUNCIL
| | Sample_contact_address | 1230 YORK AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240631/suppl/GSM240631.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240631/suppl/GSM240631.EXP.gz
| | Sample_series_id | GSE9480
| | Sample_data_row_count | 31099
| | |
|
GSM240632 | GPL1355 |
|
Untreated Testes, biological rep 3
|
normal rat testis
|
normal adult rat testis
|
gene expression data from normal rat testis
|
| Sample_geo_accession | GSM240632
| | Sample_status | Public on Nov 07 2007
| | Sample_submission_date | Oct 31 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 mg/kg b.w. cadmium chloride injected via i.p.
| | Sample_growth_protocol_ch1 | Adult male SD rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by Qiagen's Rneasy kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | C YAN,,CHENG
| | Sample_contact_email | yan@popcbr.rockefeller.edu
| | Sample_contact_phone | 212-327-8738
| | Sample_contact_fax | 212-327-8733
| | Sample_contact_institute | POPULATION COUNCIL
| | Sample_contact_address | 1230 YORK AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240632/suppl/GSM240632.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240632/suppl/GSM240632.EXP.gz
| | Sample_series_id | GSE9480
| | Sample_data_row_count | 31099
| | |
|
GSM240633 | GPL1355 |
|
Testes, 8 hours after cadmium treatment, biological rep 1
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8 hour after cadmium treatment
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early to medium response after cadmium treatment
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gene expression data from rat testis 8 h after cadmium treatment
|
| Sample_geo_accession | GSM240633
| | Sample_status | Public on Nov 07 2007
| | Sample_submission_date | Oct 31 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 mg/kg b.w. cadmium chloride injected via i.p.
| | Sample_growth_protocol_ch1 | Adult male SD rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by Qiagen's Rneasy kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | C YAN,,CHENG
| | Sample_contact_email | yan@popcbr.rockefeller.edu
| | Sample_contact_phone | 212-327-8738
| | Sample_contact_fax | 212-327-8733
| | Sample_contact_institute | POPULATION COUNCIL
| | Sample_contact_address | 1230 YORK AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240633/suppl/GSM240633.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240633/suppl/GSM240633.EXP.gz
| | Sample_series_id | GSE9480
| | Sample_data_row_count | 31099
| | |
|
GSM240634 | GPL1355 |
|
Testes, 8 hours after cadmium treatment, biological rep 2
|
8 hour after cadmium treatment
|
early to medium response after cadmium treatment
|
gene expression data from rat testis 8 h after cadmium treatment
|
| Sample_geo_accession | GSM240634
| | Sample_status | Public on Nov 07 2007
| | Sample_submission_date | Oct 31 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 mg/kg b.w. cadmium chloride injected via i.p.
| | Sample_growth_protocol_ch1 | Adult male SD rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by Qiagen's Rneasy kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | C YAN,,CHENG
| | Sample_contact_email | yan@popcbr.rockefeller.edu
| | Sample_contact_phone | 212-327-8738
| | Sample_contact_fax | 212-327-8733
| | Sample_contact_institute | POPULATION COUNCIL
| | Sample_contact_address | 1230 YORK AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240634/suppl/GSM240634.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240634/suppl/GSM240634.EXP.gz
| | Sample_series_id | GSE9480
| | Sample_data_row_count | 31099
| | |
|
GSM240635 | GPL1355 |
|
Testes, 20 hours after cadmium treatment, biological rep 1
|
20 hour after cadmium treatment
|
medium to late response after cadmium treatment
|
gene expression data from rat testis 20 h after cadmium treatment
|
| Sample_geo_accession | GSM240635
| | Sample_status | Public on Nov 07 2007
| | Sample_submission_date | Oct 31 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 mg/kg b.w. cadmium chloride injected via i.p.
| | Sample_growth_protocol_ch1 | Adult male SD rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by Qiagen's Rneasy kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | C YAN,,CHENG
| | Sample_contact_email | yan@popcbr.rockefeller.edu
| | Sample_contact_phone | 212-327-8738
| | Sample_contact_fax | 212-327-8733
| | Sample_contact_institute | POPULATION COUNCIL
| | Sample_contact_address | 1230 YORK AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240635/suppl/GSM240635.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240635/suppl/GSM240635.EXP.gz
| | Sample_series_id | GSE9480
| | Sample_data_row_count | 31099
| | |
|
GSM240636 | GPL1355 |
|
Testes, 20 hours after cadmium treatment, biological rep 2
|
20 hour after cadmium treatment
|
medium to late response after cadmium treatment
|
gene expression data from rat testis 20 h after cadmium treatment
|
| Sample_geo_accession | GSM240636
| | Sample_status | Public on Nov 07 2007
| | Sample_submission_date | Oct 31 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3 mg/kg b.w. cadmium chloride injected via i.p.
| | Sample_growth_protocol_ch1 | Adult male SD rats
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by Qiagen's Rneasy kit purification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | C YAN,,CHENG
| | Sample_contact_email | yan@popcbr.rockefeller.edu
| | Sample_contact_phone | 212-327-8738
| | Sample_contact_fax | 212-327-8733
| | Sample_contact_institute | POPULATION COUNCIL
| | Sample_contact_address | 1230 YORK AVENUE
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240636/suppl/GSM240636.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240636/suppl/GSM240636.EXP.gz
| | Sample_series_id | GSE9480
| | Sample_data_row_count | 31099
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