Search results for the GEO ID: GSE9492  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM240943 | GPL570 |
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Patient 1-ME, renal graft bx, diagnosis CAN I
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Chronic allograft nephropathy biopsy grade I from human transplanted kidney
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Patient identifier: 1-ME, Sex: male, Age of patient: 42, Type of donor: deceased, Serum creatinine: 177 microMol/L, Renal graft bx: 1-ME, Banff'97: CAN I,
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Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of chronic allograft nephropathy grade I.
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| Sample_geo_accession | GSM240943
| | Sample_status | Public on Feb 24 2009
| | Sample_submission_date | Nov 01 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Hôpital Tenon, Paris, France
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| | Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Friedrich,,Raulf
| | Sample_contact_email | friedrich.raulf@novartis.com
| | Sample_contact_phone | +41 61 324 6880
| | Sample_contact_fax | +41 61 324 3576
| | Sample_contact_laboratory | Raulf
| | Sample_contact_department | Novartis Institutes for BioMedical Research / ATDA
| | Sample_contact_institute | Novartis Pharma AG
| | Sample_contact_address | WSJ-386.6.09
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4002
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240943/suppl/GSM240943.cel.gz
| | Sample_series_id | GSE9492
| | Sample_series_id | GSE9493
| | Sample_data_row_count | 54613
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GSM240944 | GPL570 |
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Patient 3-AO, renal graft bx, diagnosis CAN I
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Chronic allograft nephropathy biopsy grade I from human transplanted kidney
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Patient identifier: 3-AO, Sex: male, Age of patient: 57, Type of donor: deceased, Serum creatinine: 131 microMol/L, Renal graft bx: 3-AO, Banff'97: CAN I,
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Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of chronic allograft nephropathy grade I.
|
| Sample_geo_accession | GSM240944
| | Sample_status | Public on Feb 24 2009
| | Sample_submission_date | Nov 01 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Hôpital Tenon, Paris, France
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| | Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Friedrich,,Raulf
| | Sample_contact_email | friedrich.raulf@novartis.com
| | Sample_contact_phone | +41 61 324 6880
| | Sample_contact_fax | +41 61 324 3576
| | Sample_contact_laboratory | Raulf
| | Sample_contact_department | Novartis Institutes for BioMedical Research / ATDA
| | Sample_contact_institute | Novartis Pharma AG
| | Sample_contact_address | WSJ-386.6.09
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4002
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240944/suppl/GSM240944.cel.gz
| | Sample_series_id | GSE9492
| | Sample_series_id | GSE9493
| | Sample_data_row_count | 54613
| | |
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GSM240945 | GPL570 |
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Patient 4-MS, renal graft bx, diagnosis CAN I
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Chronic allograft nephropathy biopsy grade I from human transplanted kidney
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Patient identifier: 4-MS, Sex: male, Age of patient: 35, Serum creatinine: 231 microMol/L, Renal graft bx: 4-MS, Banff'97: CAN I,
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Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of chronic allograft nephropathy grade I.
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| Sample_geo_accession | GSM240945
| | Sample_status | Public on Feb 24 2009
| | Sample_submission_date | Nov 01 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Hôpital Tenon, Paris, France
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| | Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Friedrich,,Raulf
| | Sample_contact_email | friedrich.raulf@novartis.com
| | Sample_contact_phone | +41 61 324 6880
| | Sample_contact_fax | +41 61 324 3576
| | Sample_contact_laboratory | Raulf
| | Sample_contact_department | Novartis Institutes for BioMedical Research / ATDA
| | Sample_contact_institute | Novartis Pharma AG
| | Sample_contact_address | WSJ-386.6.09
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4002
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240945/suppl/GSM240945.cel.gz
| | Sample_series_id | GSE9492
| | Sample_series_id | GSE9493
| | Sample_data_row_count | 54613
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GSM240946 | GPL570 |
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Patient 70-PJ, renal graft bx, diagnosis non-rejecting
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Biopsy from non-rejecting human kidney allograft
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Patient identifier: 70-PJ, Sex: male, Type of donor: deceased, Serum creatinine: 128 microMol/L, Renal graft bx: 70-PJ, Banff'97: non-rejecting,
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Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection.
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| Sample_geo_accession | GSM240946
| | Sample_status | Public on Feb 24 2009
| | Sample_submission_date | Nov 01 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Hôpital Tenon, Paris, France
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| | Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Friedrich,,Raulf
| | Sample_contact_email | friedrich.raulf@novartis.com
| | Sample_contact_phone | +41 61 324 6880
| | Sample_contact_fax | +41 61 324 3576
| | Sample_contact_laboratory | Raulf
| | Sample_contact_department | Novartis Institutes for BioMedical Research / ATDA
| | Sample_contact_institute | Novartis Pharma AG
| | Sample_contact_address | WSJ-386.6.09
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4002
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240946/suppl/GSM240946.cel.gz
| | Sample_series_id | GSE9492
| | Sample_series_id | GSE9493
| | Sample_data_row_count | 54613
| | |
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GSM240947 | GPL570 |
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Patient 281004-L7, control kidney from nephrectomy
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Human control kidney from nephrectomy
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Patient identifier: 281004-L7, Control kidney sample from nephrectomy
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Gene expression data from human normal adult kidney (from nephrectomy).
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| Sample_geo_accession | GSM240947
| | Sample_status | Public on Feb 24 2009
| | Sample_submission_date | Nov 01 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Hôpital Tenon, Paris, France
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| | Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Friedrich,,Raulf
| | Sample_contact_email | friedrich.raulf@novartis.com
| | Sample_contact_phone | +41 61 324 6880
| | Sample_contact_fax | +41 61 324 3576
| | Sample_contact_laboratory | Raulf
| | Sample_contact_department | Novartis Institutes for BioMedical Research / ATDA
| | Sample_contact_institute | Novartis Pharma AG
| | Sample_contact_address | WSJ-386.6.09
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4002
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240947/suppl/GSM240947.cel.gz
| | Sample_series_id | GSE9492
| | Sample_series_id | GSE9493
| | Sample_data_row_count | 54613
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GSM240948 | GPL570 |
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Human adult normal kidney control, pool of 5 samples
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Human control kidney (pool of 5 adult healthy samples)
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Pool of 5 normal adult kidney samples, Sex: male, Age: 24-26-46-49-62, Lot#A507273
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Gene expression data from human normal adult kidney (commercial pool)
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| Sample_geo_accession | GSM240948
| | Sample_status | Public on Feb 24 2009
| | Sample_submission_date | Nov 01 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | AMS Biotechnology, Abingdon, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| | Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Friedrich,,Raulf
| | Sample_contact_email | friedrich.raulf@novartis.com
| | Sample_contact_phone | +41 61 324 6880
| | Sample_contact_fax | +41 61 324 3576
| | Sample_contact_laboratory | Raulf
| | Sample_contact_department | Novartis Institutes for BioMedical Research / ATDA
| | Sample_contact_institute | Novartis Pharma AG
| | Sample_contact_address | WSJ-386.6.09
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4002
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM240nnn/GSM240948/suppl/GSM240948.cel.gz
| | Sample_series_id | GSE9492
| | Sample_series_id | GSE9493
| | Sample_data_row_count | 54613
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