Search results for the GEO ID: GSE9562  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM241835 | GPL339 |
|
wild type 1
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241835
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241835/suppl/GSM241835.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241837 | GPL339 |
|
wild type 2
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241837
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241837/suppl/GSM241837.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241838 | GPL339 |
|
wild type 3
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241838
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241838/suppl/GSM241838.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241839 | GPL339 |
|
pRb-/-.1
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241839
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241839/suppl/GSM241839.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241840 | GPL339 |
|
pRb-/-.2
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241840
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241840/suppl/GSM241840.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241841 | GPL339 |
|
pRb-/-.3
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241841
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241841/suppl/GSM241841.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241842 | GPL339 |
|
pRb-/-;p107-/-.1
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241842
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241842/suppl/GSM241842.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241843 | GPL339 |
|
pRb-/-;p107-/-.2
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241843
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241843/suppl/GSM241843.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241844 | GPL339 |
|
pRb-/-;p130-/-.1
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241844
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241844/suppl/GSM241844.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
| | |
|
GSM241845 | GPL339 |
|
pRb-/-;p130-/-.2
|
pooled primary keratinocyte cultures
|
age: newborn
strain: FVB
tissue: skin
|
RNA integrity tested with Bioanalyzer (Agilent)
|
| Sample_geo_accession | GSM241845
| | Sample_status | Public on Nov 13 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary keratinocytes were obtained from newborn mice as described in Santos et al J Biol Chem 277, 19122 (2002). Pooled cells from five different mice of same genotype were cultured in low Ca2+ medium for no longer that 3 days without passage.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol and purified using RNeasy Mini kit (Qiagen) following manufacturers' recommendations.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | RMA normalization, log2 transformed, probe value mean-centered, mean=0, stdv=1
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ramón,,García-Escudero
| | Sample_contact_email | ramon.garcia@ciemat.es
| | Sample_contact_institute | CIEMAT
| | Sample_contact_address | Avda Complutense 40, Ed 70A
| | Sample_contact_city | Madrid
| | Sample_contact_zip/postal_code | 28040
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241845/suppl/GSM241845.CEL.gz
| | Sample_series_id | GSE9562
| | Sample_data_row_count | 22690
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