Search results for the GEO ID: GSE9570  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM241954 | GPL1355 |
|
rat kidney at embryonic day 13, rep1
|
rat kidney at embryonic day 13, rep1
|
rat kidney at embryonic day 13, rep1
|
none
|
| Sample_geo_accession | GSM241954
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241954/suppl/GSM241954.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241954/suppl/GSM241954.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241955 | GPL1355 |
|
rat kidney at embryonic day 13, rep2
|
rat kidney at embryonic day 13, rep2
|
rat kidney at embryonic day 13, rep2
|
none
|
| Sample_geo_accession | GSM241955
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241955/suppl/GSM241955.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241955/suppl/GSM241955.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241956 | GPL1355 |
|
rat kidney at embryonic day 13, rep3
|
rat kidney at embryonic day 13, rep3
|
rat kidney at embryonic day 13, rep3
|
none
|
| Sample_geo_accession | GSM241956
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241956/suppl/GSM241956.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241956/suppl/GSM241956.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241957 | GPL1355 |
|
rat kidney at embryonic day 18, rep1
|
rat kidney at embryonic day 18, rep1
|
rat kidney at embryonic day 18, rep1
|
none
|
| Sample_geo_accession | GSM241957
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241957/suppl/GSM241957.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241957/suppl/GSM241957.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241958 | GPL1355 |
|
rat kidney at embryonic day 18, rep2
|
rat kidney at embryonic day 18, rep2
|
rat kidney at embryonic day 18, rep2
|
none
|
| Sample_geo_accession | GSM241958
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241958/suppl/GSM241958.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241958/suppl/GSM241958.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241959 | GPL1355 |
|
rat kidney at embryonic day 18, rep3
|
rat kidney at embryonic day 18, rep3
|
rat kidney at embryonic day 18, rep3
|
none
|
| Sample_geo_accession | GSM241959
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241959/suppl/GSM241959.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241959/suppl/GSM241959.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241960 | GPL1355 |
|
rat kidney at embryonic day 18, rep4
|
rat kidney at embryonic day 18, rep4
|
rat kidney at embryonic day 18, rep4
|
none
|
| Sample_geo_accession | GSM241960
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241960/suppl/GSM241960.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241960/suppl/GSM241960.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241961 | GPL1355 |
|
rat kidney at week 4 post birth, rep1
|
rat kidney at week 4 post birth, rep1
|
rat kidney at week 4 post birth, rep1
|
none
|
| Sample_geo_accession | GSM241961
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241961/suppl/GSM241961.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241961/suppl/GSM241961.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241962 | GPL1355 |
|
rat kidney at week 4 post birth, rep2
|
rat kidney at week 4 post birth, rep2
|
rat kidney at week 4 post birth, rep2
|
none
|
| Sample_geo_accession | GSM241962
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241962/suppl/GSM241962.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241962/suppl/GSM241962.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241963 | GPL1355 |
|
rat kidney at week 4 post birth, rep3
|
rat kidney at week 4 post birth, rep3
|
rat kidney at week 4 post birth, rep3
|
none
|
| Sample_geo_accession | GSM241963
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241963/suppl/GSM241963.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241963/suppl/GSM241963.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241964 | GPL1355 |
|
non-branched in vitro-formed UBs and MM, rep1
|
non-branched in vitro-formed UBs and MM, rep1
|
non-branched in vitro-formed UBs and MM, rep1
|
none
|
| Sample_geo_accession | GSM241964
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241964/suppl/GSM241964.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241964/suppl/GSM241964.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
| | |
|
GSM241965 | GPL1355 |
|
non-branched in vitro-formed UBs and MM, rep2
|
non-branched in vitro-formed UBs and MM, rep2
|
non-branched in vitro-formed UBs and MM, rep2
|
none
|
| Sample_geo_accession | GSM241965
| | Sample_status | Public on Nov 30 2007
| | Sample_submission_date | Nov 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | Embryonic kidneys were immediately processed after dissection. Recombination was cultured for 6 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was extracted using the Ambion Acqueous micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Sanjay,,Nigam
| | Sample_contact_laboratory | Nigam Lab
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of California, San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0693
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241965/suppl/GSM241965.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM241nnn/GSM241965/suppl/GSM241965.CHP.gz
| | Sample_series_id | GSE9570
| | Sample_data_row_count | 31099
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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