Search results for the GEO ID: GSE9580  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM242090 | GPL339 |
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Apc1638N_tumor_16
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Apc1638N, C57Bl6/J, intestinal tumor
|
Strain: C57Bl6/J
Gender: Male
Age: 8 months
Tissue: Intestinal tumor
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Apc1638N, C57Bl6/J, intestinal tumor
|
| Sample_geo_accession | GSM242090
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Nov 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals kept ad libitum under spf conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from LCM cells using RNeasy Mini (QIAGEN) with DNase digestion on the column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Protocol released by Affymetrix: Small Sample Labeling Protocol vII.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | Data analysis was performed using R Statistical Computing software v2.4.1 complemented with Bioconductor Packages: affy,and vsn. Cel files were uploaded and summarized using the affy package and normalized with vsn at the probe level.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Claudia,,Gaspar
| | Sample_contact_email | cscgaspar@gmail.com
| | Sample_contact_department | Experimental Pathology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molenwaterplein 40, PO Box 2040
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3000 CA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242090/suppl/GSM242090.CEL.gz
| | Sample_series_id | GSE9580
| | Sample_data_row_count | 22690
| | |
|
GSM242091 | GPL339 |
|
Apc1638N_tumor_18
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Apc1638N, C57Bl6/J, intestinal tumor
|
Strain: C57Bl6/J
Gender: Male
Age: 8 months
Tissue: Intestinal tumor
|
Apc1638N, C57Bl6/J, intestinal tumor
|
| Sample_geo_accession | GSM242091
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Nov 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals kept ad libitum under spf conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from LCM cells using RNeasy Mini (QIAGEN) with DNase digestion on the column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Protocol released by Affymetrix: Small Sample Labeling Protocol vII.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | Data analysis was performed using R Statistical Computing software v2.4.1 complemented with Bioconductor Packages: affy,and vsn. Cel files were uploaded and summarized using the affy package and normalized with vsn at the probe level.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Claudia,,Gaspar
| | Sample_contact_email | cscgaspar@gmail.com
| | Sample_contact_department | Experimental Pathology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molenwaterplein 40, PO Box 2040
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3000 CA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242091/suppl/GSM242091.CEL.gz
| | Sample_series_id | GSE9580
| | Sample_data_row_count | 22690
| | |
|
GSM242092 | GPL339 |
|
Apc1638N_tumor_2
|
Apc1638N, C57Bl6/J, intestinal tumor
|
Strain: C57Bl6/J
Gender: Male
Age: 8 months
Tissue: Intestinal tumor
|
Apc1638N, C57Bl6/J, intestinal tumor
|
| Sample_geo_accession | GSM242092
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Nov 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals kept ad libitum under spf conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from LCM cells using RNeasy Mini (QIAGEN) with DNase digestion on the column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Protocol released by Affymetrix: Small Sample Labeling Protocol vII.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | Data analysis was performed using R Statistical Computing software v2.4.1 complemented with Bioconductor Packages: affy,and vsn. Cel files were uploaded and summarized using the affy package and normalized with vsn at the probe level.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Claudia,,Gaspar
| | Sample_contact_email | cscgaspar@gmail.com
| | Sample_contact_department | Experimental Pathology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molenwaterplein 40, PO Box 2040
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3000 CA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242092/suppl/GSM242092.CEL.gz
| | Sample_series_id | GSE9580
| | Sample_data_row_count | 22690
| | |
|
GSM242093 | GPL339 |
|
WT_normal_36
|
C57Bl6/J, normal intestinal epithelial cells
|
Strain: C57Bl6/J
Gender: Male
Age: 8 months
Tissue: Intestine
|
C57Bl6/J, normal intestinal epithelial cells
|
| Sample_geo_accession | GSM242093
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Nov 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals kept ad libitum under spf conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from LCM cells using RNeasy Mini (QIAGEN) with DNase digestion on the column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Protocol released by Affymetrix: Small Sample Labeling Protocol vII.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | Data analysis was performed using R Statistical Computing software v2.4.1 complemented with Bioconductor Packages: affy,and vsn. Cel files were uploaded and summarized using the affy package and normalized with vsn at the probe level.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Claudia,,Gaspar
| | Sample_contact_email | cscgaspar@gmail.com
| | Sample_contact_department | Experimental Pathology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molenwaterplein 40, PO Box 2040
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3000 CA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242093/suppl/GSM242093.CEL.gz
| | Sample_series_id | GSE9580
| | Sample_data_row_count | 22690
| | |
|
GSM242094 | GPL339 |
|
WT_normal_62
|
C57Bl6/J, normal intestinal epithelial cells
|
Strain: C57Bl6/J
Gender: Male
Age: 8 months
Tissue: Intestine
|
C57Bl6/J, normal intestinal epithelial cells
|
| Sample_geo_accession | GSM242094
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Nov 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Animals kept ad libitum under spf conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from LCM cells using RNeasy Mini (QIAGEN) with DNase digestion on the column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Protocol released by Affymetrix: Small Sample Labeling Protocol vII.
| | Sample_hyb_protocol | Standard Affymetrix protocols.
| | Sample_scan_protocol | Standard Affymetrix protocols.
| | Sample_data_processing | Data analysis was performed using R Statistical Computing software v2.4.1 complemented with Bioconductor Packages: affy,and vsn. Cel files were uploaded and summarized using the affy package and normalized with vsn at the probe level.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Claudia,,Gaspar
| | Sample_contact_email | cscgaspar@gmail.com
| | Sample_contact_department | Experimental Pathology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molenwaterplein 40, PO Box 2040
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3000 CA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242094/suppl/GSM242094.CEL.gz
| | Sample_series_id | GSE9580
| | Sample_data_row_count | 22690
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