Search results for the GEO ID: GSE9599  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM242823 | GPL570 |
|
Sensitive, replicate 1 (198_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242823
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242823/suppl/GSM242823.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242824 | GPL570 |
|
Sensitive, replicate 2 (198_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242824
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242824/suppl/GSM242824.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242825 | GPL570 |
|
Sensitive, replicate 1 (410_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242825
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242825/suppl/GSM242825.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242826 | GPL570 |
|
Sensitive, replicate 2 (410_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242826
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242826/suppl/GSM242826.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242827 | GPL570 |
|
Resistant, replicate 1 (281_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242827
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242827/suppl/GSM242827.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242828 | GPL570 |
|
Resistant, replicate 2 (281_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242828
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242828/suppl/GSM242828.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242829 | GPL570 |
|
Resistant, replicate 1 (294_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242829
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242829/suppl/GSM242829.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242830 | GPL570 |
|
Resistant, replicate 2 (294_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242830
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242830/suppl/GSM242830.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242831 | GPL570 |
|
Resistant, replicate 1 (247_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242831
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242831/suppl/GSM242831.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242832 | GPL570 |
|
Resistant, replicate 2 (247_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242832
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242832/suppl/GSM242832.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242833 | GPL570 |
|
Resistant, replicate 1 (185_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242833
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242833/suppl/GSM242833.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242834 | GPL570 |
|
Resistant, replicate 2 (185_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242834
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242834/suppl/GSM242834.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242835 | GPL570 |
|
Resistant, replicate 1 (354_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242835
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242835/suppl/GSM242835.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242836 | GPL570 |
|
Resistant, replicate 2 (354_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242836
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242836/suppl/GSM242836.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242837 | GPL570 |
|
Resistant, replicate 1 (253_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242837
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242837/suppl/GSM242837.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242838 | GPL570 |
|
Resistant, replicate 2 (253_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242838
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242838/suppl/GSM242838.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242839 | GPL570 |
|
Resistant, replicate 1 (215_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242839
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242839/suppl/GSM242839.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242840 | GPL570 |
|
Resistant, replicate 2 (215_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242840
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242840/suppl/GSM242840.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242841 | GPL570 |
|
Resistant, replicate 1 (420_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242841
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242841/suppl/GSM242841.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242842 | GPL570 |
|
Resistant, replicate 2 (420_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242842
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242842/suppl/GSM242842.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242843 | GPL570 |
|
Resistant, replicate 1 (140_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242843
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242843/suppl/GSM242843.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242844 | GPL570 |
|
Resistant, replicate 2 (140_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242844
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242844/suppl/GSM242844.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242845 | GPL570 |
|
Resistant, replicate 1 (159_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242845
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242845/suppl/GSM242845.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242846 | GPL570 |
|
Resistant, replicate 2 (159_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242846
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242846/suppl/GSM242846.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242847 | GPL570 |
|
Resistant, replicate 1 (163_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242847
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242847/suppl/GSM242847.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242848 | GPL570 |
|
Resistant, replicate 2 (163_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242848
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242848/suppl/GSM242848.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242849 | GPL570 |
|
Resistant, replicate 1 (265_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242849
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242849/suppl/GSM242849.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242850 | GPL570 |
|
Resistant, replicate 2 (265_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242850
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242850/suppl/GSM242850.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242851 | GPL570 |
|
Resistant, replicate 1 (286_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242851
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242851/suppl/GSM242851.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242852 | GPL570 |
|
Resistant, replicate 2 (286_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242852
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242852/suppl/GSM242852.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242853 | GPL570 |
|
Resistant, replicate 1 (194_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242853
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242853/suppl/GSM242853.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242854 | GPL570 |
|
Resistant, replicate 2 (194_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242854
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242854/suppl/GSM242854.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242855 | GPL570 |
|
Sensitive, replicate 1 (219_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242855
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242855/suppl/GSM242855.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242856 | GPL570 |
|
Sensitive, replicate 2 (219_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
validation
|
| Sample_geo_accession | GSM242856
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242856/suppl/GSM242856.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242857 | GPL570 |
|
Resistant, replicate 1 (287_1)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242857
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242857/suppl/GSM242857.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
| | |
|
GSM242858 | GPL570 |
|
Resistant, replicate 2 (287_2)
|
Tumor
|
Human pancreatic tumor was xenografted in six-week-old female athymic nude mice
|
training
|
| Sample_geo_accession | GSM242858
| | Sample_status | Public on Apr 16 2008
| | Sample_submission_date | Nov 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Aik Choon,,Tan
| | Sample_contact_email | actan@jhu.edu
| | Sample_contact_phone | 410-502-8743
| | Sample_contact_fax | 410-614-9006
| | Sample_contact_department | The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins
| | Sample_contact_institute | Johns Hopkins University
| | Sample_contact_address | 1650 Orleans Street, RM 1M86
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21231
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM242nnn/GSM242858/suppl/GSM242858.CEL.gz
| | Sample_series_id | GSE9599
| | Sample_data_row_count | 54675
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