Search results for the GEO ID: GSE9648  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM243727 | GPL570 |
|
jurkat_rep1
|
Jurkat cells rep 1
|
Jurkat, Human T-acute lymphoblastic leukemia
|
Jurkat cells are an immortalized line of T lymphocyte cells that are used to study acute T cell leukemia. The cell line was established from peripheral blood of a human with T cell leukemia.
|
| Sample_geo_accession | GSM243727
| | Sample_status | Public on Aug 04 2008
| | Sample_submission_date | Nov 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | Allowed to reach 6 X 10 5 cells/ml.
| | Sample_growth_protocol_ch1 | RPMI-1640 (Mediatech), 10% FBS (Gibco), 2mmol/L L-glutamine (Mediatech), 100IU/ml penicillin, 100 microgram/ml streptomycin, 0.25 microgram/ml amphotericin B (all from Mediatech) at 37 degrees Celsius, 5% carbon dioxide, 95% air, and 80% relative humidity.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | IVT Labeling Affymetrix
| | Sample_hyb_protocol | GeneChip Hybridization oven 640
| | Sample_scan_protocol | GeneChip Scanner
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM243nnn/GSM243727/suppl/GSM243727.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM243nnn/GSM243727/suppl/GSM243727.CHP.gz
| | Sample_series_id | GSE9648
| | Sample_data_row_count | 54675
| | |
|
GSM243728 | GPL570 |
|
jurkat_rep_2
|
Jurkat cells rep 2
|
Jurkat, human T-acute lymphoblasic leukemia cell line
|
Jurkat cells are an immortalized line of T lymphocyte cells that are used to study acute T cell leukemia. The cell line was established from peripheral blood of a human with T cell leukemia.
|
| Sample_geo_accession | GSM243728
| | Sample_status | Public on Aug 04 2008
| | Sample_submission_date | Nov 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | Allowed to reach 6 X 10 5 cells/ml.
| | Sample_growth_protocol_ch1 | RPMI-1640 (Mediatech), 10% FBS (Gibco), 2mmol/L L-glutamine (Mediatech), 100IU/ml penicillin, 100 microgram/ml streptomycin, 0.25 microgram/ml amphotericin B (all from Mediatech) at 37 degrees Celsius, 5% carbon dioxide, 95% air, and 80% relative humidity.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | IVT Labeling Affymetrix
| | Sample_hyb_protocol | GeneChip Hybridization oven 640
| | Sample_scan_protocol | GeneChip Scanner
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM243nnn/GSM243728/suppl/GSM243728.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM243nnn/GSM243728/suppl/GSM243728.CHP.gz
| | Sample_series_id | GSE9648
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
