Search results for the GEO ID: GSE9691  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM245051 | GPL3921 |
|
HMLE_shCntrl_rep1
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), expressing Control shRNA
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245051
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245051/suppl/GSM245051.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245052 | GPL3921 |
|
HMLE_shCntrl_rep2
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), expressing Control shRNA
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245052
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245052/suppl/GSM245052.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245053 | GPL3921 |
|
HMLE_shCntrl_rep3
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), expressing Control shRNA
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245053
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245053/suppl/GSM245053.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245054 | GPL3921 |
|
HMLE_shEcad_rep1
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), exressing shRNA against E-cadherin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245054
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245054/suppl/GSM245054.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245055 | GPL3921 |
|
HMLE_shEcad_rep2
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), exressing shRNA against E-cadherin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245055
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245055/suppl/GSM245055.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245056 | GPL3921 |
|
HMLE_shEcad_rep3
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), exressing shRNA against E-cadherin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245056
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245056/suppl/GSM245056.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245057 | GPL3921 |
|
HMLE_shEcad+shBcat_rep1
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), expressing shRNA against E-cadherin and shRNA against Beta-catenin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245057
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245057/suppl/GSM245057.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245058 | GPL3921 |
|
HMLE_shEcad+shBcat_rep2
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), expressing shRNA against E-cadherin and shRNA against Beta-catenin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245058
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245058/suppl/GSM245058.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245059 | GPL3921 |
|
HMLE_shEcad+shBcat_rep3
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized), expressing shRNA against E-cadherin and shRNA against Beta-catenin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245059
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245059/suppl/GSM245059.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245060 | GPL3921 |
|
HMLE_DNEcad_rep1
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized) expressing dominant-negative E-cadherin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245060
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245060/suppl/GSM245060.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245061 | GPL3921 |
|
HMLE_DNEcad_rep2
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized) expressing dominant-negative E-cadherin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245061
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245061/suppl/GSM245061.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
GSM245062 | GPL3921 |
|
HMLE_DNEcad_rep3
|
HMLE cells (Immortalized human mammary epithelial cells, SV40 - largeT/smallT, hTERT-immortalized) expressing dominant-negative E-cadherin
|
Gender: female, Age: Premenopausal, Tissue: Normal Breast
|
Gene expression changes induced by knockdown of E-cadherin, expression of dominant-negative E-cadherin and double knockdown of E-cadherin and Beta-catenin in immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM245062
| | Sample_status | Public on Jan 15 2008
| | Sample_submission_date | Nov 26 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Immortalized by SV40 - largeT/smallT in MEGM medium
| | Sample_growth_protocol_ch1 | in vitro cultured in MEGM medium on regular culture plates
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an HT Scanner
| | Sample_data_processing | Raw data files (.CEL) were converted into probe-set values using RMA normalization.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Tamer,T,Onder
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | One Blackfan Circle
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245062/suppl/GSM245062.CEL.gz
| | Sample_series_id | GSE9691
| | Sample_data_row_count | 22277
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
