Search results for the GEO ID: GSE9712  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM245389 | GPL96 |
|
Radioresistant tumor-untreated-rep1
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radioresistant tumor
|
| Sample_geo_accession | GSM245389
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245389/suppl/GSM245389.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245389/suppl/GSM245389.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245390 | GPL96 |
|
Radioresistant tumor-untreated-rep2
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radioresistant tumor
|
| Sample_geo_accession | GSM245390
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245390/suppl/GSM245390.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245390/suppl/GSM245390.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245391 | GPL96 |
|
Radioresistant tumor-untreated-rep3
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radioresistant tumor
|
| Sample_geo_accession | GSM245391
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245391/suppl/GSM245391.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245391/suppl/GSM245391.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245392 | GPL96 |
|
Radioresistant tumor-irradiated-rep1
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radioresistant tumor, 5 hours after irradiation at 3Gy
|
| Sample_geo_accession | GSM245392
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245392/suppl/GSM245392.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245392/suppl/GSM245392.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245393 | GPL96 |
|
Radioresistant tumor-irradiated-rep2
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radioresistant tumor, 5 hours after irradiation at 3Gy
|
| Sample_geo_accession | GSM245393
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245393/suppl/GSM245393.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245393/suppl/GSM245393.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245394 | GPL96 |
|
Radioresistant tumor-irradiated-rep3
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radioresistant tumor, 5 hours after irradiation at 3Gy
|
| Sample_geo_accession | GSM245394
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245394/suppl/GSM245394.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245394/suppl/GSM245394.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245395 | GPL96 |
|
Radiosensitive tumor-untreated-rep1
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radiosensitive tumor
|
| Sample_geo_accession | GSM245395
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245395/suppl/GSM245395.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245395/suppl/GSM245395.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245396 | GPL96 |
|
Radiosensitive tumor-untreated-rep2
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radiosensitive tumor
|
| Sample_geo_accession | GSM245396
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245396/suppl/GSM245396.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245396/suppl/GSM245396.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245397 | GPL96 |
|
Radiosensitive tumor-untreated-rep3
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radiosensitive tumor
|
| Sample_geo_accession | GSM245397
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245397/suppl/GSM245397.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245397/suppl/GSM245397.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245398 | GPL96 |
|
Radiosensitive tumor-irradiated-rep1
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radiosensitive tumor, 5 hours after irradiation at 3Gy
|
| Sample_geo_accession | GSM245398
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245398/suppl/GSM245398.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245398/suppl/GSM245398.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245399 | GPL96 |
|
Radiosensitive tumor-irradiated-rep2
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radiosensitive tumor, 5 hours after irradiation at 3Gy
|
| Sample_geo_accession | GSM245399
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245399/suppl/GSM245399.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245399/suppl/GSM245399.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
| | |
|
GSM245400 | GPL96 |
|
Radiosensitive tumor-irradiated-rep3
|
tumor xenografts in nude mice
|
Squamous cell carcinoma
|
Gene expression data from radiosensitive tumor, 5 hours after irradiation at 3Gy
|
| Sample_geo_accession | GSM245400
| | Sample_status | Public on Nov 28 2007
| | Sample_submission_date | Nov 28 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumors were excised, frozen in liquid nitrogen and stored at -80C
| | Sample_growth_protocol_ch1 | SCC-61 and nu61 xenografts were generated and allowed to grow to a volume of 150-200 mm3. At that time,tumors were either irradiated at 3Gy or left un-treated and 5 hours later they were collected for RNA purification
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on U133A Human GeneChip Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Agilent GeneArray Scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 700-800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Nikolai,N.,Khodarev
| | Sample_contact_email | nikolai@rover.uchicago.edu
| | Sample_contact_phone | 773-834-3282
| | Sample_contact_fax | 773-702-1968
| | Sample_contact_department | Radiation and Cellular Oncology
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245400/suppl/GSM245400.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM245nnn/GSM245400/suppl/GSM245400.EXP.gz
| | Sample_series_id | GSE9712
| | Sample_series_id | GSE9716
| | Sample_data_row_count | 22283
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