Search results for the GEO ID: GSE9764  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM246355 | GPL570 |
|
hMSC 30 days TCM replicate 1
|
bone marrow derived cells
|
HMSCs exposed to breast cancer tumor condition media for 30 days
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246355
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were exposed to 100 % condition media collected overnight from MDAMB231 cells for 30 days. Condition media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246355/suppl/GSM246355.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246355/suppl/GSM246355.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246356 | GPL570 |
|
hMSCs 30 days TCM replicate 2
|
bone marrow derived cells
|
hMSCs exposed to breast tumor condition media
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246356
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were exposed to 100 % condition media collected overnight from MDAMB231 cells for 30 days. Condition media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246356/suppl/GSM246356.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246356/suppl/GSM246356.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246357 | GPL570 |
|
hMSC 30days TCM replicate 3
|
bone marrow derived
|
HMSCs exposed to breast cancer condition media for 30 days
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246357
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were exposed to 100 % condition media collected overnight from MDAMB231 cells for 30 days. Condition media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246357/suppl/GSM246357.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246357/suppl/GSM246357.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246358 | GPL570 |
|
5-Aza hMSCs replicate 1
|
bone marrow derived
|
hMSCs exposed to 5-Azacytidine
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246358
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were exposed to 5-Azacytidine and cultured for 21 days. Media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246358/suppl/GSM246358.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246358/suppl/GSM246358.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246359 | GPL570 |
|
5-Aza hMSCs replicate 2
|
bone marrow derived
|
hMSCs exposed to 5-Azacytidine
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246359
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were exposed to 5-Azacytidine and cultured for 21 days. Media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246359/suppl/GSM246359.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246359/suppl/GSM246359.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246360 | GPL570 |
|
5-Aza hMSCs replicate 3
|
bone marrow derived
|
hMSCs exposed to 5-Azacytidine
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246360
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were exposed to 5-Azacytidine and cultured for 21 days. Media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246360/suppl/GSM246360.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246360/suppl/GSM246360.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246361 | GPL570 |
|
hMSC DMEM replicate 1
|
bone marrow derived
|
hMSCs control DMEM media
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246361
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were grown in DMEM media for 30 days as a control. Media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246361/suppl/GSM246361.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246361/suppl/GSM246361.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246362 | GPL570 |
|
hMSCs DMEM replicate 2
|
bone marrow
|
hMSCs control DMEM media
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246362
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were grown in DMEM media for 30 days as a control. Media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246362/suppl/GSM246362.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246362/suppl/GSM246362.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246363 | GPL570 |
|
hMSCs DMEM replicate 3
|
bone marrow derived
|
hMSCs control DMEM media
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246363
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were grown in DMEM media for 30 days as a control. Media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246363/suppl/GSM246363.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246363/suppl/GSM246363.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246364 | GPL570 |
|
hMSCs MEM replicate 1
|
bone marrow derived
|
hMSCs control alpha MEM media
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246364
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were grown in alpha MEM media for 30 days as a control. Media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246364/suppl/GSM246364.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246364/suppl/GSM246364.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
GSM246365 | GPL570 |
|
hMSCs MEM replicate 2
|
bone marrow derived
|
hMSCs control alpha MEM media
|
Samples were processed in CINJ Core Expression Array Facility according to Affymetrix protocol
|
| Sample_geo_accession | GSM246365
| | Sample_status | Public on Jun 23 2008
| | Sample_submission_date | Dec 03 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | own
| | Sample_treatment_protocol_ch1 | Cells were grown in alpha MEM media for 30 days as a control. Media was changed every 3 days.
| | Sample_growth_protocol_ch1 | standard cell culture condition (95% air, 5% CO2, 37C)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesis of Biotin-Labeled cRNA/Purification
| | Sample_label_protocol_ch1 | ENZO BioArray RNA Transcript Labeling Kit
| | Sample_label_protocol_ch1 | GeneChip Sample Cleanup Module
| | Sample_label_protocol_ch1 | Miscellaneous Reagents/Supplies
| | Sample_label_protocol_ch1 | 100% ethanol at room temperature
| | Sample_label_protocol_ch1 | 80% ethanol at room temperature
| | Sample_label_protocol_ch1 | Water, Molecular Biology Grade or DEPC-treated
| | Sample_label_protocol_ch1 | Ethidium Bromide
| | Sample_label_protocol_ch1 | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_label_protocol_ch1 | Micropipettors
| | Sample_label_protocol_ch1 | Sterile-barrier, RNase-free pipette tips
| | Sample_label_protocol_ch1 | Mini agarose gel electrophoresis unit with appropriate buffers
| | Sample_label_protocol_ch1 | UV Spectrophotometer
| | Sample_label_protocol_ch1 | Cooling water bath
| | Sample_hyb_protocol | Water, Molecular Biology Grade or DEPC-treated
| | Sample_hyb_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_hyb_protocol | Herring Sperm DNA
| | Sample_hyb_protocol | GeneChip Eukaryotic Hybridization Control Kit
| | Sample_hyb_protocol | 5M NaCl, RNase-free, DNase-free
| | Sample_hyb_protocol | MES Free Acid Monohydrate
| | Sample_hyb_protocol | MES Sodium Salt
| | Sample_hyb_protocol | EDTA Disodium Salt
| | Sample_hyb_protocol | Miscellaneous Reagents/Supplies
| | Sample_hyb_protocol | Surfact-Amps 20 (Tween-20), 10%
| | Sample_hyb_protocol | Hybridization Oven 640
| | Sample_hyb_protocol | Sterile, RNase-free, microcentrifuge tubes, 1.5mL
| | Sample_hyb_protocol | Micropipettors
| | Sample_hyb_protocol | Sterile-barrier pipette tips and non-barrier tips
| | Sample_hyb_protocol | Heatblock
| | Sample_scan_protocol | Washing, Staining, and Scanning
| | Sample_scan_protocol | Water, Molecular Biology Grade
| | Sample_scan_protocol | Distilled water
| | Sample_scan_protocol | Acetylated Bovine Serum Albumin (BSA) solution (50 mg/mL)
| | Sample_scan_protocol | R-Phycoerythrin Streptavidin
| | Sample_scan_protocol | 20X SSPE (3M NaCl, 0.2M NaH2PO4, 0.02M EDTA)
| | Sample_scan_protocol | Goat IgG, Reagent Grade
| | Sample_scan_protocol | Anti-streptavidin antibody (goat), biotinylated
| | Sample_scan_protocol | 10% surfact-Amps 20 (Tween-20)
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pravin,,Mishra
| | Sample_contact_email | mishrapr@umdnj.edu
| | Sample_contact_laboratory | Bertino/Banerjee
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | UMDNJ
| | Sample_contact_address | 195 Little Albany St.
| | Sample_contact_city | New Brunswick
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08904
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246365/suppl/GSM246365.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM246nnn/GSM246365/suppl/GSM246365.CHP.gz
| | Sample_series_id | GSE9764
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
