Search results for the GEO ID: GSE9797  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM247379 | GPL1355 |
|
Cortex_Control_rep1 (06SE453)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247379
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247379/suppl/GSM247379.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247380 | GPL1355 |
|
corticosterone_treated_rep1 (06SE454)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247380
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247380/suppl/GSM247380.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247381 | GPL1355 |
|
Cortex_Control_rep2 (06SE455)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247381
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247381/suppl/GSM247381.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247382 | GPL1355 |
|
corticosterone_treated_rep2 (06SE456)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247382
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247382/suppl/GSM247382.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247383 | GPL1355 |
|
Cortex_Control_rep3 (06SE457)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247383
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247383/suppl/GSM247383.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247384 | GPL1355 |
|
corticosterone_treated_rep3 (06SE458)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247384
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247384/suppl/GSM247384.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247385 | GPL1355 |
|
Cortex_Control_rep4 (06SE459)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247385
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247385/suppl/GSM247385.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247386 | GPL1355 |
|
corticosterone_treated_rep4 (06SE460)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247386
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247386/suppl/GSM247386.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247387 | GPL1355 |
|
Cortex_Control_rep5 (06SE461)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247387
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247387/suppl/GSM247387.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247388 | GPL1355 |
|
corticosterone_treated_rep5 (06SE462)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247388
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247388/suppl/GSM247388.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247389 | GPL1355 |
|
corticosterone_treated_rep6 (06SE463)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247389
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247389/suppl/GSM247389.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247390 | GPL1355 |
|
corticosterone_treated_rep7 (06SE464)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247390
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247390/suppl/GSM247390.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247391 | GPL1355 |
|
corticosterone_treated_rep8 (06SE465)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247391
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247391/suppl/GSM247391.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247392 | GPL1355 |
|
corticosterone_treated_rep9 (06SE466)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247392
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247392/suppl/GSM247392.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247393 | GPL1355 |
|
corticosterone_treated_rep10 (06SE467)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH CORTICOSTERONE (18 MG/KG) FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247393
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247393/suppl/GSM247393.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247394 | GPL1355 |
|
Cortex_Control_rep7 (06SE469)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247394
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247394/suppl/GSM247394.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247395 | GPL1355 |
|
Cortex_Control_rep8 (06SE470)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247395
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247395/suppl/GSM247395.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247396 | GPL1355 |
|
Cortex_Control_rep9 (06SE471)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247396
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247396/suppl/GSM247396.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
GSM247397 | GPL1355 |
|
Cortex_Control_rep10 (06SE472)
|
FRONTOPARIETAL BRAIN CORTEX OF RATS TREATED WITH PLACEBO FOR 14 DAYS
|
Male Sprague Dawley rats (225-250 g) aged approximately two months
|
comparison of corticosterone-treated and control rats with depressive-like behaviour
|
| Sample_geo_accession | GSM247397
| | Sample_status | Public on Dec 12 2007
| | Sample_submission_date | Dec 05 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Reagent Protocol
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix IVT Labeling kit
| | Sample_hyb_protocol | Samples were hybridised to Affymetrix RAE230 2.0 genechip using Affymetrix standard hybridization protocol using 15ug of biotinylated cRNA (Affymetrix Expression analysis technical manual). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | The chips were scanned using an Agilent GeneArray Scanner 2500
| | Sample_data_processing | Feature intensity values from scanned arrays were normalised and reduced to expression summaries using RMA method and further normalised to the median of each probe
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Leyre ,,Uriguen
| | Sample_contact_email | leyre.uriguen@ehu.es
| | Sample_contact_phone | +34946015674
| | Sample_contact_fax | +34946013220
| | Sample_contact_department | Pharmacology
| | Sample_contact_institute | University of the Basque Country
| | Sample_contact_address | Barrio Sarriena s/n
| | Sample_contact_city | Leioa
| | Sample_contact_state | Vizcaya
| | Sample_contact_zip/postal_code | 48940
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM247nnn/GSM247397/suppl/GSM247397.CEL.gz
| | Sample_series_id | GSE9797
| | Sample_series_id | GSE9798
| | Sample_data_row_count | 31099
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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