Search results for the GEO ID: GSE9832  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM248200 | GPL570 |
|
H1-OGN hES cells
|
H1-OGN hES cells
|
hES cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248200
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248200/suppl/GSM248200.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248200/suppl/GSM248200.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248201 | GPL570 |
|
dH1f fibroblast_44
|
dH1f fibroblast
|
fibroblast
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248201
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248201/suppl/GSM248201.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248201/suppl/GSM248201.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248202 | GPL570 |
|
dH1f fibroblast_58
|
dH1f fibroblast
|
fibroblast
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248202
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248202/suppl/GSM248202.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248202/suppl/GSM248202.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248203 | GPL570 |
|
dH1f-iPS3-3 iPS cells
|
dH1f-iPS3-3 iPS cells
|
iPS cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248203
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248203/suppl/GSM248203.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248203/suppl/GSM248203.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248204 | GPL570 |
|
dH1cf16 fibroblast
|
dH1cf16 fibroblast
|
fibroblast
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248204
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248204/suppl/GSM248204.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248204/suppl/GSM248204.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248205 | GPL570 |
|
dH1cf16-iPS5 iPS cells_30
|
dH1cf16-iPS5 iPS cells
|
iPS cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248205
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248205/suppl/GSM248205.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248205/suppl/GSM248205.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248206 | GPL570 |
|
dH1cf16-iPS5 iPS cells_32
|
dH1cf16-iPS5 iPS cells
|
iPS cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248206
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248206/suppl/GSM248206.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248206/suppl/GSM248206.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248207 | GPL570 |
|
dH1cf32-iPS2 iPS cells_10
|
dH1cf32-iPS2 iPS cells
|
iPS cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248207
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248207/suppl/GSM248207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248207/suppl/GSM248207.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248208 | GPL570 |
|
dH1cf32-iPS2 iPS cells_20
|
dH1cf32-iPS2 iPS cells
|
iPS cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248208
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248208/suppl/GSM248208.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248208/suppl/GSM248208.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248209 | GPL570 |
|
MRC5 fibroblast_40
|
MRC5 fibroblast
|
fibroblast
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248209
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248209/suppl/GSM248209.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248209/suppl/GSM248209.CHP.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248210 | GPL570 |
|
MRC5 fibroblast_59
|
MRC5 fibroblast
|
fibroblast
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248210
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248210/suppl/GSM248210.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248210/suppl/GSM248210.CHP.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248211 | GPL570 |
|
MRC5-iPS2 iPS cells_2
|
MRC5-iPS2 iPS cells
|
iPS cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248211
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248211/suppl/GSM248211.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248211/suppl/GSM248211.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248212 | GPL570 |
|
MRC5-iPS2 iPS cells_22
|
MRC5-iPS2 iPS cells
|
iPS cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248212
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248212/suppl/GSM248212.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248212/suppl/GSM248212.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248213 | GPL570 |
|
BJ1 fibroblast_47
|
BJ1 fibroblast
|
fibroblast
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248213
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248213/suppl/GSM248213.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248213/suppl/GSM248213.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248214 | GPL570 |
|
BJ1 fibroblast_48
|
BJ1 fibroblast
|
fibroblast
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248214
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248214/suppl/GSM248214.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248214/suppl/GSM248214.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
GSM248215 | GPL570 |
|
BJ1-iPS1 iPS cells
|
BJ1-iPS1 iPS cells
|
iPS cells
|
gene expresion of iPS production
|
| Sample_geo_accession | GSM248215
| | Sample_status | Public on Dec 10 2007
| | Sample_submission_date | Dec 10 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were washed with PBS and Rneasy kit was used to isolate total RNA
| | Sample_growth_protocol_ch1 | hES cell, and iPS cells were cultured in hES medium containing bFGF. Somatic cells were cultured in alpha-MEM with 10% IFS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy kit was used to isolate total RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2006, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | In-Hyun,,Park
| | Sample_contact_email | inhyun.park@childrens.harvard.edu
| | Sample_contact_department | Hem/Onc
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | 300 Longwood
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248215/suppl/GSM248215.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248215/suppl/GSM248215.CHP.gz
| | Sample_series_id | GSE9832
| | Sample_data_row_count | 54675
| | |
|
| |
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