Search results for the GEO ID: GSE9844  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM248238 | GPL570 |
|
OTSCC 1
|
Oral Tongue Squamous Cell Carcinoma
|
Sex: F, Age 57, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248238
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248238/suppl/GSM248238.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248650 | GPL570 |
|
OTSCC 2
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 44, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248650
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248650/suppl/GSM248650.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248651 | GPL570 |
|
OTSCC 3
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 52, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248651
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248651/suppl/GSM248651.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248652 | GPL570 |
|
OTSCC normal control 1
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 41
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248652
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248652/suppl/GSM248652.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248653 | GPL570 |
|
OTSCC normal control 2
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 53
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248653
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248653/suppl/GSM248653.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248655 | GPL570 |
|
OTSCC normal control 3
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 62
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248655
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248655/suppl/GSM248655.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248656 | GPL570 |
|
OTSCC normal control 4
|
Tongue Squamous Cells from control subjects
|
Sex F, Age 57
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248656
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248656/suppl/GSM248656.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248658 | GPL570 |
|
OTSCC normal control 5
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 38
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248658
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248658/suppl/GSM248658.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248659 | GPL570 |
|
OTSCC normal control 6
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 65
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248659
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248659/suppl/GSM248659.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248660 | GPL570 |
|
OTSCC normal control 7
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 37
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248660
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248660/suppl/GSM248660.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248661 | GPL570 |
|
OTSCC normal control 8
|
Tongue Squamous Cells from control subjects
|
Sex F, Age 52
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248661
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248661/suppl/GSM248661.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248662 | GPL570 |
|
OTSCC 4
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 67, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248662
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248662/suppl/GSM248662.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248663 | GPL570 |
|
OTSCC 5
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 41, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248663
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248663/suppl/GSM248663.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248664 | GPL570 |
|
OTSCC 6
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 53, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248664
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248664/suppl/GSM248664.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248665 | GPL570 |
|
OTSCC 7
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 62, pN2B
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248665
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248665/suppl/GSM248665.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248667 | GPL570 |
|
OTSCC 8
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 82, pN2B
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248667
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248667/suppl/GSM248667.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248668 | GPL570 |
|
OTSCC 9
|
Oral Tongue Squamous Cell Carcinoma
|
Sex F, Age 70, pN2C
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248668
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248668/suppl/GSM248668.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248669 | GPL570 |
|
OTSCC 10
|
Oral Tongue Squamous Cell Carcinoma
|
Sex F, Age 65, pN2C
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248669
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248669/suppl/GSM248669.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248670 | GPL570 |
|
OTSCC 11
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 45, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248670
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248670/suppl/GSM248670.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248671 | GPL570 |
|
OTSCC 12
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 47, pN2C
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248671
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248671/suppl/GSM248671.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248672 | GPL570 |
|
OTSCC normal control 10
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 70
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248672
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248672/suppl/GSM248672.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248673 | GPL570 |
|
OTSCC 13
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 62, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248673
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248673/suppl/GSM248673.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248674 | GPL570 |
|
OTSCC 14
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 78, pN2B
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248674
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248674/suppl/GSM248674.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248675 | GPL570 |
|
OTSCC 15
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 55, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248675
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248675/suppl/GSM248675.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248676 | GPL570 |
|
OTSCC 16
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 60, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248676
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248676/suppl/GSM248676.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248677 | GPL570 |
|
OTSCC 17
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 67, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248677
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248677/suppl/GSM248677.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248678 | GPL570 |
|
OTSCC 18
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 38, pN1
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248678
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248678/suppl/GSM248678.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248679 | GPL570 |
|
OTSCC 19
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 65, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248679
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248679/suppl/GSM248679.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248680 | GPL570 |
|
OTSCC 20
|
Oral Tongue Squamous Cell Carcinoma
|
Sex F, Age 66, pN2C
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248680
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248680/suppl/GSM248680.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248681 | GPL570 |
|
OTSCC 21
|
Oral Tongue Squamous Cell Carcinoma
|
Sex F, Age 50, pN2C
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248681
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248681/suppl/GSM248681.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248682 | GPL570 |
|
OTSCC 22
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 74, pN2B
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248682
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248682/suppl/GSM248682.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248683 | GPL570 |
|
OTSCC 23
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 37, pN2A
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248683
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248683/suppl/GSM248683.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248684 | GPL570 |
|
OTSCC 24
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 62, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248684
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248684/suppl/GSM248684.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248685 | GPL570 |
|
OTSCC 25
|
Oral Tongue Squamous Cell Carcinoma
|
Sex F, Age 52, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248685
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248685/suppl/GSM248685.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248686 | GPL570 |
|
OTSCC 26
|
Oral Tongue Squamous Cell Carcinoma
|
Sex M, Age 47, pN0
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248686
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248686/suppl/GSM248686.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248687 | GPL570 |
|
OTSCC normal control 11
|
Tongue Squamous Cells from control subjects
|
Sex F, Age 70
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248687
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248687/suppl/GSM248687.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248780 | GPL570 |
|
OTSCC normal control 12
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 38
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248780
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248780/suppl/GSM248780.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
GSM248781 | GPL570 |
|
OTSCC normal control 9
|
Tongue Squamous Cells from control subjects
|
Sex M, Age 62
|
This studys aim is to compare specific transcriptomic signatures that are associated with Oral Tongue Squamous Cell Carcinoma
|
| Sample_geo_accession | GSM248781
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Dec 11 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was isolated using RNeasy Mini kit (Qiagen), and quantified by the RiboGreen RNA Quantitation Reagent (Molecular Probes).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The Enzo BioArray High Yield RNA Transcript Labeling System (Enzo) was used for labeling the sample prior to hybridization. The biotinylated cRNA (IVT product) was purified using the RNeasy kit (Qiagen).
| | Sample_hyb_protocol | The samples were hybridized to the Affymetrix Human Genome U133 Plus 2.0 GeneChip arrays according to the Affymetrix protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000. The scanned array images were processed with GeneChip Operating software (GCOS), and the CEL files were extracted for further analysis.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tianwei,,Yu
| | Sample_contact_department | Biostatistics
| | Sample_contact_institute | Emory University
| | Sample_contact_address | 1518 Clifton Rd NE
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30322
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM248nnn/GSM248781/suppl/GSM248781.CEL.gz
| | Sample_series_id | GSE9844
| | Sample_data_row_count | 54675
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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