Search results for the GEO ID: GSE9971  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM252136 | GPL96 |
|
Recurrent-NSCLC-1
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252136
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252136/suppl/GSM252136.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252136/suppl/GSM252136.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252136/suppl/GSM252136.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252137 | GPL96 |
|
Recurrent-NSCLC-2
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252137
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252137/suppl/GSM252137.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252137/suppl/GSM252137.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252137/suppl/GSM252137.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252138 | GPL96 |
|
Recurrent-NSCLC-3
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252138
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252138/suppl/GSM252138.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252138/suppl/GSM252138.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252138/suppl/GSM252138.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252139 | GPL96 |
|
Recurrent-NSCLC-4
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252139
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252139/suppl/GSM252139.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252139/suppl/GSM252139.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252139/suppl/GSM252139.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252140 | GPL96 |
|
Recurrent-NSCLC-5
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252140
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252140/suppl/GSM252140.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252140/suppl/GSM252140.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252140/suppl/GSM252140.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252141 | GPL96 |
|
Recurrent-NSCLC-6
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252141
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252141/suppl/GSM252141.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252141/suppl/GSM252141.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252141/suppl/GSM252141.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252142 | GPL96 |
|
Recurrent-NSCLC-7
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252142
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252142/suppl/GSM252142.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252142/suppl/GSM252142.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252142/suppl/GSM252142.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252143 | GPL96 |
|
Recurrent-NSCLC-8
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252143
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252143/suppl/GSM252143.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252143/suppl/GSM252143.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252143/suppl/GSM252143.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252145 | GPL96 |
|
Recurrent-NSCLC-10
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252145
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252145/suppl/GSM252145.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252145/suppl/GSM252145.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252145/suppl/GSM252145.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252146 | GPL96 |
|
Recurrent-NSCLC-11
|
recurrent NSCLC tumor
|
from patient with recurrent cancer
|
Gene expression data from patient with recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252146
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252146/suppl/GSM252146.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252146/suppl/GSM252146.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252146/suppl/GSM252146.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252147 | GPL96 |
|
Non-Recurrent-NSCLC-1
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252147
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252147/suppl/GSM252147.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252147/suppl/GSM252147.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252147/suppl/GSM252147.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252148 | GPL96 |
|
Non-Recurrent-NSCLC-2
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252148
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252148/suppl/GSM252148.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252148/suppl/GSM252148.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252148/suppl/GSM252148.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252149 | GPL96 |
|
Non-Recurrent-NSCLC-3
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252149
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252149/suppl/GSM252149.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252149/suppl/GSM252149.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252149/suppl/GSM252149.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252150 | GPL96 |
|
Non-Recurrent-NSCLC-4
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252150
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252150/suppl/GSM252150.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252150/suppl/GSM252150.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252150/suppl/GSM252150.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252151 | GPL96 |
|
Non-Recurrent-NSCLC-5
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252151
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252151/suppl/GSM252151.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252151/suppl/GSM252151.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252151/suppl/GSM252151.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252152 | GPL96 |
|
Non-Recurrent-NSCLC-6
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252152
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252152/suppl/GSM252152.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252152/suppl/GSM252152.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252152/suppl/GSM252152.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252153 | GPL96 |
|
Non-Recurrent-NSCLC-7
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252153
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252153/suppl/GSM252153.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252153/suppl/GSM252153.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252153/suppl/GSM252153.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252154 | GPL96 |
|
Non-Recurrent-NSCLC-8
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252154
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252154/suppl/GSM252154.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252154/suppl/GSM252154.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252154/suppl/GSM252154.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252155 | GPL96 |
|
Non-Recurrent-NSCLC-9
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252155
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252155/suppl/GSM252155.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252155/suppl/GSM252155.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252155/suppl/GSM252155.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252156 | GPL96 |
|
Non-Recurrent-NSCLC-10
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252156
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252156/suppl/GSM252156.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252156/suppl/GSM252156.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252156/suppl/GSM252156.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252157 | GPL96 |
|
Non-Recurrent-NSCLC-11
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252157
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252157/suppl/GSM252157.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252157/suppl/GSM252157.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252157/suppl/GSM252157.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252158 | GPL96 |
|
Non-Recurrent-NSCLC-12
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252158
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252158/suppl/GSM252158.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252158/suppl/GSM252158.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252158/suppl/GSM252158.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252159 | GPL96 |
|
Non-Recurrent-NSCLC-13
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252159
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252159/suppl/GSM252159.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252159/suppl/GSM252159.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252159/suppl/GSM252159.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252160 | GPL96 |
|
Non-Recurrent-NSCLC-14
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252160
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252160/suppl/GSM252160.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252160/suppl/GSM252160.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252160/suppl/GSM252160.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252161 | GPL96 |
|
Non-Recurrent-NSCLC-15
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252161
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252161/suppl/GSM252161.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252161/suppl/GSM252161.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252161/suppl/GSM252161.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
|
GSM252162 | GPL96 |
|
Non-Recurrent-NSCLC-16
|
non-recurrent NSCLC tumor
|
from patient with non-recurrent cancer
|
Gene expression data from patient with non-recurrent cancer (frozen NSCLC tumor tissue)
|
| Sample_geo_accession | GSM252162
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Dec 19 2007
| | Sample_last_update_date | Dec 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Resected tumor tissue was placed in liquid nitrogen immediately following resection. Specimens were homogenized using a Polytron homogenizer (Brinkmann Instruments, Westbury, NY) in ice-cold Trizol reagent (Gibco BRL, Gaithersburg, MD). Trizol extraction was followed by clean-up using the Qiagen RNeasy Mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on HGU133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL96
| | Sample_contact_name | David,A.,Potter
| | Sample_contact_email | dapotter@umn.edu
| | Sample_contact_laboratory | Potter
| | Sample_contact_department | Division of Hematology, Oncology and Transplantation
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252162/suppl/GSM252162.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252162/suppl/GSM252162.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252162/suppl/GSM252162.EXP.gz
| | Sample_series_id | GSE9971
| | Sample_data_row_count | 22283
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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