Search results for the GEO ID: GSE9984 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM252349 | GPL570 |
|
First trimester placenta Grp1H17634
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252349
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252349/suppl/GSM252349.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252350 | GPL570 |
|
First trimester placenta Grp1H17790
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252350
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252350/suppl/GSM252350.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252351 | GPL570 |
|
First trimester placenta Grp1H18035
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252351
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252351/suppl/GSM252351.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252352 | GPL570 |
|
First trimester placenta Grp1H18075
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252352
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252352/suppl/GSM252352.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252353 | GPL570 |
|
Second trimester placenta Grp2H17464
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252353
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252353/suppl/GSM252353.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252354 | GPL570 |
|
Second trimester placenta Grp2H17607
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252354
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252354/suppl/GSM252354.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252355 | GPL570 |
|
Second trimester placenta Grp2H17795
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252355
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252355/suppl/GSM252355.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252356 | GPL570 |
|
Second trimester placenta Grp2H17812
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252356
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252356/suppl/GSM252356.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252357 | GPL570 |
|
Term placenta Grp3HT5
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252357
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252357/suppl/GSM252357.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
|
GSM252358 | GPL570 |
|
Term placenta Grp3HT6
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
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Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
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Sample_geo_accession | GSM252358
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252358/suppl/GSM252358.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
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GSM252359 | GPL570 |
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Term placenta Grp3HT7
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placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252359
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252359/suppl/GSM252359.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
| |
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GSM252360 | GPL570 |
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Term placenta Grp3HT8
|
placenta
|
Collection of human placentae was approved by the Institutional Review Board of the University of Washington. Subjects were excluded if they had any chronic disease, were on chronic medication, were smokers, abused alcohol or drugs. Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington. After collection, the tissues were kept on ice until the placental villus could be dissected and snap-frozen in liquid nitrogen and stored at -80C.
|
Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
|
Sample_geo_accession | GSM252360
| Sample_status | Public on Apr 29 2008
| Sample_submission_date | Dec 19 2007
| Sample_last_update_date | Apr 29 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | University of Washington Medical Center
| Sample_treatment_protocol_ch1 | Term human placenta samples were obtained from scheduled uncomplicated C-sections performed at the University of Washington Medical Center, Seattle, WA. The 1st (45-59 days) and 2nd (109-115 days) trimester placentae, from uncomplicated elective termination, were provided by Birth Defects Laboratory of the University of Washington.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from the placental tissue using the RNAesy kit (Quigen) according to the manufacturer's protocol. | Sample_label | biotin
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA (2 ug) was labeled and hybridized to the Affymetrix Human Genome U133 Plus 2.0 arrays and hybridized according to manufacurer's instructions.
| Sample_hyb_protocol | The standard hybridization protocol was used as recommended by Affymterix.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | GeneTraffic RMA normalization log2
| Sample_platform_id | GPL570
| Sample_contact_name | Richard,,Beyer
| Sample_contact_email | dbeyer@u.washington.edu
| Sample_contact_phone | 206-616-7378
| Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| Sample_contact_institute | University of Washington
| Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252360/suppl/GSM252360.CEL.gz
| Sample_series_id | GSE9984
| Sample_data_row_count | 54675
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